Noura Chelbat, Ulrich Bodenhofer, Sepp Hochreiter,
"Filtering and Identifying non-reliable probes in Affymetrix GeneChip® platforms"
: ISMB 2009 Proceedings, 6-2009, Poster presentation at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden, June 27 - July 2 2009
Original Titel:
Filtering and Identifying non-reliable probes in Affymetrix GeneChip® platforms
Sprache des Titels:
Englisch
Original Buchtitel:
ISMB 2009 Proceedings
Original Kurzfassung:
Non-reliable/bad probes of oligonucleotide microarrays fail to spot signals which are detected and by the majority of probes in a probe set. We predict “bad” probes from the nucleotide sequence using SVMs and spectrum kernels with accuracies between 60 and 75% where, surprisingly, the models generalize to other platforms.
Sprache der Kurzfassung:
Englisch
Erscheinungsmonat:
6
Erscheinungsjahr:
2009
Notiz zum Zitat:
Poster presentation at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden, June 27 - July 2 2009