Saiful Akbar, Roland Wagner, Josef Küng,
"Exploiting Geometrical Properties on Protein Similarity Search"
: Seventeenth International Workshop on Database and Expert Systems Applications (DEXA 2006), Serie Proceedings - International Workshop on Database and Expert Systems Applications, IEEE Computer Society, 10662 Los Vaqueros Circle P.O. Box 3064, Los Alamitos, CA 90720-1314, Seite(n) 228-232, 9-2006, ISBN: 0-7695-2641-1, ISSN: 1529-4188, Saiful Akbar, Josef Küng, Roland Wagner: Exploiting Geometrical Properties on Protein Similarity Search, 4th International Workshop on Biological Data Management - BIDM 2006 in conjunction with DEXA 2006, Andrzej Frycz Modrzewski Cracow College, Krakow, Poland, September 4-8, 2006 // Series ISSN: 1529-4188
Original Titel:
Exploiting Geometrical Properties on Protein Similarity Search
Sprache des Titels:
Deutsch
Original Buchtitel:
Seventeenth International Workshop on Database and Expert Systems Applications (DEXA 2006)
Original Kurzfassung:
This paper discusses about several combinations of protein similarity measurement-methods, with respect to normalization, spatial partitions, geometrical properties, and distance metrics. We compare the effectiveness of possible combinations to each other. Our experiment shows that the feature based on fractional occupancy outperforms other methods. In addition, merging individual features might also yield good result. A prototype of 3D protein geometrical-similarity retrieval system is built for implementing our approach.
Sprache der Kurzfassung:
Deutsch
Veröffentlicher:
IEEE Computer Society
Verlagsanschrift:
10662 Los Vaqueros Circle P.O. Box 3064, Los Alamitos, CA 90720-1314
Serie:
Proceedings - International Workshop on Database and Expert Systems Applications
Seitenreferenz:
228-232
Erscheinungsmonat:
9
Erscheinungsjahr:
2006
Notiz zum Zitat:
Saiful Akbar, Josef Küng, Roland Wagner: Exploiting Geometrical Properties on Protein Similarity Search, 4th International Workshop on Biological Data Management - BIDM 2006 in conjunction with DEXA 2006, Andrzej Frycz Modrzewski Cracow College, Krakow, Poland, September 4-8, 2006 // Series ISSN: 1529-4188
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